FastQCFastQC Report
Tue 28 Mar 2023
EGAF00001998431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66854573
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTATTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1499730.22432721244065082No Hit
ACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGT1478320.22112473891651363No Hit
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1423640.21294579205524208No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1084260.1621818749780961No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1047050.15661606274861706No Hit
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG941800.14087293624626096No Hit
CCTATCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT820950.12279638671837752No Hit
CCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATC711190.1063786616362055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)