FastQCFastQC Report
Wed 22 Mar 2023
EGAF00001998435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67394823
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT2443380.36254713511155No Hit
ACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGT1728490.25647222190938906No Hit
CCTATTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1440060.21367516611772983No Hit
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1389710.20620426586772106No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1198020.17776142835184833No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1097910.16290717166806715No Hit
CCCTGTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1067710.15842611531155737No Hit
CCTATCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT857220.1271937460240826No Hit
GTTCCAATTTTAGTATATGTGCTGCCGAGATCGGAAGAGCGTCGTGTAGG725440.10764031533994829Illumina Single End PCR Primer 1 (100% over 23bp)
CCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATC711520.1055748747941663No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)