FastQCFastQC Report
Thu 23 Mar 2023
EGAF00001998437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67545845
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1443260.21367117400041408No Hit
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1441210.21336767642776547No Hit
CCTATTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1401960.2075568082685175No Hit
ACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGT1366590.20232036478335566No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1021530.1512350611647541No Hit
CCTATCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT750670.1111348892000685No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG722220.10692293508209127No Hit
CCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATC700710.10373843128322698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)