FastQCFastQC Report
Tue 28 Mar 2023
EGAF00001998439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65357929
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1830720.2801067946935712No Hit
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1543880.23621923515966975No Hit
ACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGT1525740.23344374941868187No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC1262910.19322980689917515No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1038380.15887590318230554No Hit
CCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATC845520.12936762424035803No Hit
CCCTGTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT780560.11942850881948845No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG775800.11870021156882128No Hit
CCTATTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT705280.10791039599801273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)