FastQCFastQC Report
Thu 23 Mar 2023
EGAF00001998445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68471656
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGCTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT1535720.22428550581572032No Hit
CCTCTATCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG1507710.22019476204869354No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA967700.1413285520653977No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT944510.13794174921079752No Hit
CCTCTGTCGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAG837270.12227979413846804No Hit
CCCTGTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT730860.10673905710707508No Hit
CCTATTTCCAAAAATCCATTTAATATATTGTCCTCGGATAGAGGACGTAT722270.10548452340629821No Hit
ACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGCAGGGGT712230.10401822324846356No Hit
CCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCGC697680.10189325638626295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)