FastQCFastQC Report
Fri 24 Mar 2023
EGAF00001998446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001998446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72355727
Sequences flagged as poor quality0
Sequence length76
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC7151270.98834885592401No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC4402180.6084079564289362No Hit
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC2207060.3050290683970323No Hit
GGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTT1140000.15755490923337692No Hit
CGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATA938910.1297630524809736No Hit
ACCTGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAG809460.11187227791934148No Hit
TACCTGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGA803060.11098775913066286No Hit
GGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCCCTCC782300.10811860130988664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)