FastQCFastQC Report
Mon 3 Apr 2023
EGAF00001999115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001999115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67942069
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTTCTCGATGGGGGCTGGG1970750.2900632890646883No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCT1185340.17446333581628196No Hit
CTTGGGTTTTGGGGGGAAGAGGAAGACTGACGGTCCCCCCAGGAGTTCAG1149290.16915734491394427No Hit
GCCGGCCGTCGCACTCATTTACCCGGAGACAGGGAGAGGCTCTTCTGCGT907730.13360352626294028No Hit
GGGGGCACTTCTCCCTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACG819550.12062482230265906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)