FastQCFastQC Report
Sun 22 Jan 2023
EGAF00002004045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002004045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123250176
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGGTTTTGGGGGGAAGAGGAAGACTGACGGTCCCCCCAGGAGTTCAG2447170.19855306332382033No Hit
GTCCGGGAGATCATGAGGGTGTCCTTGGGTTTTGGGGGGAAGAGGAAGAC1821580.14779532647482793No Hit
GTGAGGTGAAAGATGAGCTGGAGGACCGCAATAGGGGTAGGTCCCCTGTG1565900.1270505285120242No Hit
GTGAAAGATGAGCTGGAGGACCGCAATAGGGGTAGGTCCCCTGTGGAAAA1345940.10920390085284748No Hit
CCGGGAGATCATGAGGGTGTCCTTGGGTTTTGGGGGGAAGAGGAAGACTG1268550.10292480231427824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)