FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002005374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002005374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64862660
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT765100.11795692621918373No Hit
GGGAAGCTCATCAGTGGGGCCACGAGCTGAGTGCGTCCTGTCACTCCACT710110.10947901304078494No Hit
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT693180.10686888265143613No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)