FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002005459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002005459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65919044
Sequences flagged as poor quality0
Sequence length126
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1345180.20406545944446647No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC943540.14313617776374304No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA835750.12678430227234483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)