FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002005466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002005466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66455741
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAGCTCATCAGTGGGGCCACGAGCTGAGTGCGTCCTGTCACTCCACT1397810.21033698202236584No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT906570.13641710804187707No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA709160.10671162330429813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)