FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002005471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002005471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64597595
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2881120.44601041261675456No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA778420.12050293822858266No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC653600.10118023743763216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)