FastQCFastQC Report
Wed 22 Feb 2023
EGAF00002005481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002005481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72685273
Sequences flagged as poor quality0
Sequence length126
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2044540.28128669200981055No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1312750.1806074251107236No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA788450.10847451862772807No Hit
CGCGTCTCGGAGGGGGACGGGCCGCTCGGCGGACGGACGGACGGAATCGC746390.10268792689270081No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)