FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002005493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002005493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66560543
Sequences flagged as poor quality0
Sequence length126
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1755690.2637733889881277No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC854400.12836433741233153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)