FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002005501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002005501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65144630
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1280190.19651504659708713No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA772620.11860071966023907No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC747740.11478152535366307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)