FastQCFastQC Report
Sat 11 Mar 2023
EGAF00002005538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002005538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74036996
Sequences flagged as poor quality0
Sequence length126
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAAGCTCATCAGTGGGGCCACGAGCTGAGTGCGTCCTGTCACTCCACT1166710.15758472966677362No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT894690.12084363876675924No Hit
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT815630.11016519362833142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)