FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002010308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002010308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51943367
Sequences flagged as poor quality0
Sequence length31
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCAAAAAAAAAAAAAAAAAAAAAAAAAN712970.13725910374658618No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAN709350.13656219089532645No Hit
CCTCTGCAAAAAAAAAAAAAAAAAAAAAAAN580120.11168317217480338No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAN573440.11039715619513076No Hit
ATATGGGTGTAAAAAAAAAAAAAAAAAAAAN556250.1070877827384582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)