FastQCFastQC Report
Sat 11 May 2024
EGAF00002013004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002013004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20541570
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACTAGTAATCTCGTAT1134250.552172983856638TruSeq Adapter, Index 11 (97% over 38bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)