FastQCFastQC Report
Thu 5 Jan 2023
EGAF00002018690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002018690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26518029
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTA533070.20102172751979416No Hit
AGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAG424370.1600307473832237No Hit
CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCC421480.15894092279633604No Hit
CTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCT407390.15362755655784222No Hit
GGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGG391460.1476203227622988No Hit
GTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT384220.14489010476608197No Hit
TAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTA381190.14374748590854924No Hit
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC309210.11660368875831609No Hit
AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA305560.11522726670221231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)