FastQCFastQC Report
Thu 5 Jan 2023
EGAF00002018692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002018692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27106518
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTA550930.20324631883741023No Hit
CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCC451270.1664802539374478No Hit
AGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAG443710.16369125684088234No Hit
CTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCT439940.1623004474421982No Hit
TAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTA408690.1507718549464745No Hit
GGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGG402910.14863952647846546No Hit
GTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT397150.14651457630965364No Hit
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC337970.12468218898495188No Hit
AACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAA328820.12130661710220397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)