FastQCFastQC Report
Sat 18 May 2024
EGAF00002024574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002024574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377306878
Total Bases55.9 Gbp
Sequences flagged as poor quality0
Sequence length35-150
%GC41

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN31784440.8424028782215839No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC5099430.13515338037383987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)