FastQCFastQC Report
Sun 19 May 2024
EGAF00002024576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002024576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368139864
Total Bases54.8 Gbp
Sequences flagged as poor quality0
Sequence length35-150
%GC41

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN9407690.2555466256161816No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC5083390.13808311723611655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)