FastQCFastQC Report
Sun 19 May 2024
EGAF00002024614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002024614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402037729
Total Bases59.2 Gbp
Sequences flagged as poor quality0
Sequence length35-150
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN68417321.7017636670612075No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC7077640.17604417420236695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)