FastQCFastQC Report
Tue 5 Sep 2023
EGAF00002031179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002031179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38840902
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCT741390.19087867732834835No Hit
CTCCTCTGTCCACTGCTTTCGTGAAGACAAGATGAAGTTCACAATTGTCT544580.14020786643935304No Hit
GTCTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCT539830.13898492882580327No Hit
CTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGC458400.11801991622130711No Hit
CTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTG431820.11117661479643288No Hit
GCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGC430270.11077755094359035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)