FastQCFastQC Report
Fri 15 Sep 2023
EGAF00002031201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002031201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37942102
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCT1626730.4287400840364617No Hit
GTCTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCT1534350.4043924609132093No Hit
CTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGC1364660.3596690557629095No Hit
CTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTG1293610.3409431559695876No Hit
GCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGC1228720.32384078246376546No Hit
TGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTG750820.19788571545140016No Hit
CTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCTGGGTC685590.18069373172841083No Hit
ACAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGC679370.17905439187317562No Hit
CGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGATCTTCGGCC626550.16513318107678907No Hit
GAGAAACAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTG583410.1537632258750451No Hit
CCTCAGTCTACTGCTCCAGTCTTGCCTGCACCAACCACAACCGCTTCAAC565980.1491693844479149No Hit
TCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCT561780.14806243470643773No Hit
CTCCTCTGTCCACTGCTTTCGTGAAGACAAGATGAAGTTCACAATTGTCT555150.14631503547167735No Hit
CTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCCTGCCCG508810.1341016899907127No Hit
CCTGGATATGGAGTACTTCGGCACTATCGGCATCGGAACTCCTGCCCAGG480590.1266640419658352No Hit
CGTCTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGC472880.12463199851183784No Hit
GAAACAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGC469920.12385186250355872No Hit
CCAGAGTGGCAGCGTGGTGATCTTTGGTGGCATTGACTCTTCTTACTACA469220.12366737087997919No Hit
CATGAAGTGGCTGCTGCTGCTGGGTCTGGTGGCACTCTCTGAGTGCATCA465100.12258150589548256No Hit
CAACCACAACCGCTTCAACCCTGAGGATTCTTCCACCTACCAGTCCACCA456060.1201989283566841No Hit
CTTTGGTGGCATTGACTCTTCTTACTACACTGGAAGTCTGAACTGGGTGC444570.11717063013535729No Hit
CCCGTCTTTGACAACATCTGGAACCAGGGCCTGGTTTCTCAGGACCTCTT437950.11542586649521949No Hit
CTTCCACCTACCAGTCCACCAGCGAGACAGTCTCCATCACCTACGGCACC407310.10735040457168135No Hit
CTGGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATCACCGTGGACAGCA392870.10354460593669797No Hit
GCAGAACTCAGAGCTGCTCTTCCTCTGTGGCCAGTTGGGGACCAGCATCA389860.10275129195530602No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)