FastQCFastQC Report
Thu 14 Sep 2023
EGAF00002031219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002031219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37384831
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCT1672990.44750503218805515No Hit
GTCTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCT1259340.33685855099893325No Hit
CTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGC1234230.33014192307034906No Hit
GCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGC1067090.2854339504704461No Hit
CTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTG1064020.28461276179100553No Hit
ACAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGC705410.18868882943459073No Hit
TGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTG659940.17652614238111708No Hit
GAGAAACAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTG599790.1604367290038037No Hit
CTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCTGGGTC594360.1589842682450537No Hit
CGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGATCTTCGGCC537360.14373744260071686No Hit
GAAACAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGC487250.13033361044216035No Hit
TCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCT485970.12999122558558576No Hit
CCTCAGTCTACTGCTCCAGTCTTGCCTGCACCAACCACAACCGCTTCAAC479710.12831674964640072No Hit
CATGAAGTGGCTGCTGCTGCTGGGTCTGGTGGCACTCTCTGAGTGCATCA466450.12476985652282338No Hit
GCAGAACTCAGAGCTGCTCTTCCTCTGTGGCCAGTTGGGGACCAGCATCA436670.11680405884408036No Hit
CTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCCTGCCCG431130.11532217438671852No Hit
CCTGGATATGGAGTACTTCGGCACTATCGGCATCGGAACTCCTGCCCAGG427280.11429234493530278No Hit
CAACCACAACCGCTTCAACCCTGAGGATTCTTCCACCTACCAGTCCACCA413240.11053681103975033No Hit
CCAGAGTGGCAGCGTGGTGATCTTTGGTGGCATTGACTCTTCTTACTACA411680.11011952949580005No Hit
CTCCTCTGTCCACTGCTTTCGTGAAGACAAGATGAAGTTCACAATTGTCT395090.10568190076879042No Hit
CTTTGGTGGCATTGACTCTTCTTACTACACTGGAAGTCTGAACTGGGTGC392600.10501585522748517No Hit
CCCGTCTTTGACAACATCTGGAACCAGGGCCTGGTTTCTCAGGACCTCTT377550.10099015828104185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)