FastQCFastQC Report
Thu 14 Sep 2023
EGAF00002031223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002031223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37280508
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCT862240.23128440202585224No Hit
GTCTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCT749070.2009280560232709No Hit
CTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGC678730.18206028737591237No Hit
GCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGC650320.1744396830644046No Hit
CTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTG647530.17369130270435154No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC554020.14860848999160634No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT410420.11008970156737134No Hit
TGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTG388420.10418849442716822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)