FastQCFastQC Report
Mon 18 Sep 2023
EGAF00002031408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002031408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38913063
Sequences flagged as poor quality0
Sequence length35-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT883330.2270008917056979No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC639690.1643895264682711No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA396660.10193492092873799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)