FastQCFastQC Report
Fri 15 Sep 2023
EGAF00002031409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002031409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38913063
Sequences flagged as poor quality0
Sequence length35-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG1055910.2713510370540607No Hit
GTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGAC513020.1318374757597468No Hit
CGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGA509300.1308814985857063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)