FastQCFastQC Report
Mon 18 Sep 2023
EGAF00002031434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002031434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39164363
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCGTTATATTTTCAGCGCATGACCACTAGACCAGTGAGCTGTTACGCT2058230.525536442403008No Hit
CCCGTCTATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGG1868820.4771735978445507No Hit
CCGGGAACGTATTCACCGCAACATGGCTGATTTGCGATTACTAGCGATTC1695100.43281694636524537No Hit
GTTCGCTATCGCTCAAAGAGTAGTATTTAGGGTTGGAGAGTGGTCTCCCC1602350.4091347023823673No Hit
CCCCGGGGTACCTTTTATCCTTTGAGCGATGGCCCTTCCACACAGAACCA1401700.3579019017876022No Hit
CCCGGGAACGTATTCACCGCAACATGGCTGATTTGCGATTACTAGCGATT1087700.2777269733711742No Hit
GGCTGATTTGCGATTACTAGCGATTCCAGCTTCATGCAGGCGAGTTGCAG1026180.2620188154215607No Hit
GTGAGTACAAGACCCGGGAACGTATTCACCGCAACATGGCTGATTTGCGA999360.25517075306446324No Hit
CACGCGCCTTAGAATACTCATCTCATCTACCTGTGTCGGTTTGCGGTACG984960.25149394106065254No Hit
GGTGAGTACAAGACCCGGGAACGTATTCACCGCAACATGGCTGATTTGCG950670.24273853247657826No Hit
CCCTACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT916680.23405972414258341No Hit
CCGTCATTATCTTCTCTAACAAAAGGAGTTTACAATCCTAAAACCTTCAT865820.22107342841245753No Hit
CCCGTTATATTTTCAGCGCATGACCACTAGACCAGTGAGCTGTTACGCTT847500.21639570647427614No Hit
CGCGCCTTAGAATACTCATCTCATCTACCTGTGTCGGTTTGCGGTACGGA830010.21192991189464772No Hit
GACCCGGGAACGTATTCACCGCAACATGGCTGATTTGCGATTACTAGCGA820890.20960126429223425No Hit
CCCCCCATCACGCTCCATAGTCGGTATTGGAATATTAACCAATTTGCCAT799760.20420605334497588No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT798430.20386645890295724No Hit
CCCCCATCACGCTCCATAGTCGGTATTGGAATATTAACCAATTTGCCATC765270.1953995779275154No Hit
CTCAGAATAGAACTTAGGGACCTTATTTGGTAGTCTGGGTTGTTCCCCTT762950.19480720266023477No Hit
CCCCCTTTTATTATCACTTGAGGCTATACCTAAATATATTTCGAAGAGAA738290.18851066210370893No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT732180.1869505703437587No Hit
CCCCATTGTAGCACGTGTGTAGCCCTAGGCGTAAGGGCCATGATGACTTG727600.18578113985921332No Hit
GCCCCGTTATATTTTCAGCGCATGACCACTAGACCAGTGAGCTGTTACGC725570.1852628115003428No Hit
CTCCCACACTCTAGAATAGTAGTTTCAAATGCAGTTCTATGGTTAAGCCA693420.17705381803350154No Hit
GTCTATCTTAGCCCCGTTATATTTTCAGCGCATGACCACTAGACCAGTGA680070.17364510690496868No Hit
CCCGCCTACGCGCTCTTTACGCCCAGTGATTCCGAGTAACGCTTGCACCC657570.16790008814901444No Hit
CCTGCATGCTCACTTCATACCGCTCCAGCACTCCTTACCGGTATACCTTC646260.16501225872102146No Hit
GTCCGTTCACCCTCTCAGGCCGGATACCCGTCATAGCCTTGGTAAGCCAT613780.15671900497909286No Hit
GTCAGCTAAACGCATTGCTGCGCTTACACATCTACCCTATCAAGCACATA597600.15258769815814444No Hit
CCCCTTTTGACGATTGATTTTATCACCCACCGCCTGACTCCCAAGATACG594000.15166849515719175No Hit
CCCGGCTTCAACCTGGATTTCTCGTGTCCTGGCCTACTCTGGATCCTGCT557950.14246369843931841No Hit
CCCAGTGATTCCGAGTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTG557910.14245348507264116No Hit
TGTCTATCTTAGCCCCGTTATATTTTCAGCGCATGACCACTAGACCAGTG554410.14155981548838162No Hit
CGCTATCGCTCAAAGAGTAGTATTTAGGGTTGGAGAGTGGTCTCCCCGGC553600.14135299481316727No Hit
CGCTCAAAGAGTAGTATTTAGGGTTGGAGAGTGGTCTCCCCGGCTTCAAC549450.14029335802040238No Hit
CCGTTATATTTTCAGCGCATGACCACTAGACCAGTGAGCTGTTACGCTTT547970.13991546345334405No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA546450.13952735551960846No Hit
CCCACACTCTAGAATAGTAGTTTCAAATGCAGTTCTATGGTTAAGCCATA533980.13634333845797517No Hit
AAAGGTCCACGGGGTCTCTCCGTCTTGCCGCGGGTAGGAGGAATTTTCAC525470.1341704446973898No Hit
ATCCTTTGAGCGATGGCCCTTCCACACAGAACCACCGGATCACTATGACC518950.13250566592899773No Hit
GTCGGGAGGGACTCTTTGCTGAGACCGCATTGCTGCGGCACACCTTATCG516680.1319260573700637No Hit
CCCCGTCTATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGG500410.12777177047409147No Hit
CCCTACACCAAGAATTCCACCTACCTCTCCCACACTCTAGAATAGTAGTT490980.12536396927992932No Hit
GTCCTGGCCTACTCTGGATCCTGCTACCTAAGAACGCCTTGTCGCATACA487970.1245954134374661No Hit
CCCCCGTCTATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCG476020.12154417014263708No Hit
CGTCATTATCTTCTCTAACAAAAGGAGTTTACAATCCTAAAACCTTCATC470310.12008621204945935No Hit
CCCGTCATAGCCTTGGTAAGCCATTACCTTACCAACAAGCTGATAGGACA467900.11947085670715493No Hit
GGTGTCTATCTTAGCCCCGTTATATTTTCAGCGCATGACCACTAGACCAG442620.11301600896713167No Hit
CCCGGGGTACCTTTTATCCTTTGAGCGATGGCCCTTCCACACAGAACCAC435560.11121334974859672No Hit
GCCATGGATAGATCACTTAGCTTCGGGTCTGCAGCATCTGACTTAAATCG430610.10994944562228677No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG421280.10756717784481774No Hit
CACCCGTACGCCACTAATCAGCCTTCTAGCAAGCTAGAAAGCTTCATCGT421190.10754419776979392No Hit
CTCGTGTCCTGGCCTACTCTGGATCCTGCTACCTAAGAACGCCTTGTCGC419630.1071458764693811No Hit
CCTTAGAATACTCATCTCATCTACCTGTGTCGGTTTGCGGTACGGACGAC416150.10625731356846019No Hit
CGCCCAGTGATTCCGAGTAACGCTTGCACCCTCCGTATTACCGCGGCTGC414870.10593048583478812No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG406290.10373971868251758No Hit
GGCCTTTCACCCCTATCCACAGCTCATCCCAACCCGTTTCAATGGGTACG405120.10344097770720795No Hit
GGCGGATACAATTCTCATATATCTTATCGTTACTCATTCCTGCATGCTCA404630.1033158639654116No Hit
CGGTGTCTATCTTAGCCCCGTTATATTTTCAGCGCATGACCACTAGACCA398140.10165874522202749No Hit
CTGGTATTAATCATCGTTTCCAATGGCTATCCCAAACTAAGAGGCACATA393460.100463781320789No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)