FastQCFastQC Report
Sat 11 May 2024
EGAF00002035685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38746889
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA577020.14892034299837595No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC496130.12804382824128152No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA392220.10122619134661368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)