FastQCFastQC Report
Sun 12 May 2024
EGAF00002035688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75231700
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA5523890.734250322669832No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA1217530.16183736377085722No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA802140.10662260722541163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)