FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002035688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75231700
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT5468980.726951537716149No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA1216890.1617522932487236No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG799480.10626903286779375No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)