FastQCFastQC Report
Sat 11 May 2024
EGAF00002035701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47508264
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA4234560.8913312429180743No Hit
CAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1924910.40517371882921255No Hit
GGGATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGA1293770.2723252527181376No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG1210260.2547472582875266No Hit
CAGGGATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA1088920.22920643869453952No Hit
TCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAA888000.1869148491723461No Hit
ATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCA849110.17872890493325538No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA805970.1696483794903556No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG805270.1695010367038459No Hit
TTCAGGGATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTG785940.16543227089922713No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA712030.14987497754074952No Hit
CTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTT668530.14071867580764474No Hit
GATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGC617200.1299142397625811No Hit
TTTCAGGGATCAGTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGT589310.12404368216864332No Hit
GAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTA550850.11594824849840862No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC544170.11454217733571574No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA520230.1095030540370829No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAACCG508270.10698559728471661No Hit
GAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGG506220.10655409340993811No Hit
AGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAA498660.104962791315633No Hit
TTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA478220.10066038194954882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)