FastQCFastQC Report
Sun 12 May 2024
EGAF00002035714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92354380
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA3212990.34789795567898346No Hit
GTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCATGAGAAGACGTTCC1883820.20397733166526588No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGA1208120.1308135033768837No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCT1116420.12088435870610575No Hit
GTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCA1054700.11420140549912197No Hit
GTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAG970270.10505944601652893No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA966070.10460467603160782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)