FastQCFastQC Report
Sun 12 May 2024
EGAF00002035715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92354380
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1150300.12455283658446951No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC992650.10748272036475151No Hit
CAGCGGCCCTGGGCTGCCTGGTCAAGGACTACTTCCCCGAACCGGTGACG967370.10474543816979767No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)