FastQCFastQC Report
Thu 9 May 2024
EGAF00002035745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48151579
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1120780.23276079897608343No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1034690.21488184219254783No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA588350.12218706265063499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)