FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002035772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61757346
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG1427070.23107696370242337No Hit
GTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCT1216630.19700166519461504No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG1078050.17456222940668467No Hit
GTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCAC1025050.1659802543975902No Hit
GCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTG827220.1339468182457193No Hit
CTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTGC744970.12062856457594534No Hit
CTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGGG677590.10971812163042109No Hit
CTTTGTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTA633580.10259184389173719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)