FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002035790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38206927
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT1580050.41355066320827116No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG395750.1035806936265772No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA387670.10146589386788422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)