FastQCFastQC Report
Thu 9 May 2024
EGAF00002035792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51592758
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2701600.5236393836514807No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA722560.14005066369973865No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA554150.10740848550876074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)