FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002035812

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035812
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78918699
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT3289600.416834038280332No Hit
GGGGGCTTTGCCTGGGTGCTGTTGGTACCAGGAGACATAGTTATAACCACC3080560.39034601926217766No Hit
GCCAGACTTGGAGCCAGAGAAGCGATCAGAAACCCCTGAGGGCCGATTACT2034270.25776780734816723No Hit
GGTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAG1667440.21128579425770816No Hit
GTTGTATATGAGCTGCAGTAATAATCAGCCTCGTCCTCAGCCTGGAGCCCA1485430.18822281903050633No Hit
GTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAGA1369930.17358750427449393No Hit
GTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCATGAGAAGACGTTCCC1262980.16003558294847206No Hit
GTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCAC1241760.15734673983918565No Hit
GTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCT1193010.15116949659801157No Hit
CCAGACTTGGAGCCAGAGAAGCGATCAGAAACCCCTGAGGGCCGATTACTG1016740.12883385216474488No Hit
GGGGCTTTGCCTGGGTGCTGTTGGTACCAGGAGACATAGTTATAACCACCA982310.12447113452795262No Hit
CTTTGTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTA927830.1175678276196621No Hit
GGCTCTTCTGCGTGTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCATG821840.10413755046823567No Hit
GCCAGAGAAGCGATCAGAAACCCCTGAGGGCCGATTACTGACCTCAAAAAT820870.10401463916682155No Hit
CAGACTTGGAGCCAGAGAAGCGATCAGAAACCCCTGAGGGCCGATTACTGA812170.10291223883455047No Hit
CCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGG805420.10205692823192637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)