FastQCFastQC Report
Sun 12 May 2024
EGAF00002035813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78918699
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAGGCAGCGCTCTCAGGACATCTCCACCATGGCCTGGGCTCTGCTGC4248420.5383286919111527No Hit
CTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTG1651260.20923558306504775No Hit
GTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGC1036510.13133896188531946No Hit
GTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGA1030010.13051532945316294No Hit
CAGCGGCCCTGGGCTGCCTGGTCAAGGACTACTTCCCCGAACCGGTGACG992440.12575473399529813No Hit
CTCCACCATGGCCTGGGCTCTGCTGCTCCTCACCCTCCTCACTCAGGGCA970360.12295691797960329No Hit
GACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCT926440.11739169699186247No Hit
CTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTG912670.1156468633625093No Hit
CACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAG882980.11188476383778197No Hit
GCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGT853810.10818855490762715No Hit
CCTGGACAGTCGATCACCATCTCCTGCACTGGAAGCAGCAGTGACGTTGG818420.10370419309623946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)