FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002035813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78918699
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAGGCAGCGCTCTCAGGACATCTCCACCATGGCCTGGGCTCTGCTGCT4246120.5380372527428512No Hit
CTCTGTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGG1637760.20752496185979952No Hit
GTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGGAAGGCAGATAGCAGCC1031530.13070793272960568No Hit
GTGACAGTGGCCTGGAAGGCAGATAGCAGCCCCGTCAAGGCGGGAGTGGAG1018840.1290999487966724No Hit
CAGCGGCCCTGGGCTGCCTGGTCAAGGACTACTTCCCCGAACCGGTGACGG988070.1252009995755252No Hit
CTCCACCATGGCCTGGGCTCTGCTGCTCCTCACCCTCCTCACTCAGGGCAC966190.12242852609620439No Hit
GACCACCACACCCTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTA925370.11725611442226132No Hit
CTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTGGCCTGG906050.11480802540852833No Hit
CACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGG877800.11122839214569415No Hit
GCCACACTGGTGTGTCTCATAAGTGACTTCTACCCGGGAGCCGTGACAGTG850610.1077830743256424No Hit
CCTGGACAGTCGATCACCATCTCCTGCACTGGAAGCAGCAGTGACGTTGGT810710.10272723831901992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)