FastQCFastQC Report
Fri 10 May 2024
EGAF00002035837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54076772
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC1829810.33837263807092627No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC1192690.2205549547225193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)