FastQCFastQC Report
Sat 11 May 2024
EGAF00002035854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30281438
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA937650.30964513640336366No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA551170.18201579462639786No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA438920.1449468813204974No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC328430.10845918215640882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)