FastQCFastQC Report
Sat 11 May 2024
EGAF00002035860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46791779
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA701970.15001994260572996No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA622020.13293360784594233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)