FastQCFastQC Report
Fri 10 May 2024
EGAF00002035862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60902242
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2021640.3319483706363388No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA650810.10686141899340915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)