FastQCFastQC Report
Fri 10 May 2024
EGAF00002035866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28004624
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA973610.34766044350390135No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA451790.16132692943850988No Hit
CTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGAC286430.10227953783632303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)