FastQCFastQC Report
Fri 10 May 2024
EGAF00002035872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24981699
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC310350.12423094201879543No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA274080.10971231380219576No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT257450.10305544070481355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)