FastQCFastQC Report
Fri 10 May 2024
EGAF00002035875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002035875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49578222
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTA550490.11103463936242006No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC537730.10846092867146387No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCG511730.10321669058644338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)